This is an open-source reimplementation of the MRI-3D Toolbox developed by C. P. Zuch and W. T. Freeman. This package includes a user-friendly Windows interface, a fixed set of high-level functions to facilitate the use of MRI-3D, and a plugin system for interfacing any application with this framework. A graphical user interface (GUI) simplifies the routine of MRI-3D, and serves as a foundation for high-level, function-level, or program-level scripting.

BrainSpan Development Release Notes v1.0.0

BrainSpan Development Release Notes v1.0.0
BDRN v1.0.0
Release date: December 12, 2011
BrainSpan is an open-source, web-based, three-dimensional atlas of the developing brain. This three-dimensional atlas is derived from a semiautomatic segmentation of high-resolution images of an infant’s brain.
Technical Information:
*Is available on the BrainSpan web-site at
*Is made up of over 5 million single-slice images of the developing brain, tiled into hundreds of thousands of 3D voxels
*Is created using the 3D-Slicer software package ( and is based on the Segmentation Editor ( a free GUI for 3D-Slicer
*Is a major step forward in the development of structural MRI image processing, segmentation, and visualization tools for the analysis of structural brain development
*Is built using the BIDS (Brain Imaging Data Structure) format. BrainSpan is the first application to use the BIDS format, allowing the conversion between BIDS, Neuroimaging Data Interchange Format (NIfTI), and Scalable Vector Graphics (SVG)
*Is authored using BrainSpan’s custom data import and export tools
*Is implemented in JavaScript, Python, C, Java, Java Swing, and Perl, and is accessible via the Neuroimaging Plug-ins repository on the 3D-Slicer website
*Is accessible to end users and includes an online learning module for training in brain development using MRI, as well as a range of cross-sections 84e02134c1

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